Delineation of Skin Strata in Reflectance Confocal Microscopy Images With Recurrent Convolutional Networks

Jul 21, 2017·
Alican Bozkurt
Alican Bozkurt
,
Trevor Gale
,
Kivanc Kose
,
Christi Alessi-Fox
,
Dana H. Brooks
,
Milind Rajadhyaksha
,
Jennifer Dy
· 0 min read
Abstract
Reflectance confocal microscopy (RCM) is an effective, non-invasive pre-screening tool for cancer diagnosis. However, acquiring and reading RCM images requires extensive training and experience, and novice clinicians exhibit high variance in diagnostic accuracy. Consequently, there is a compelling need for quantitative tools to standardize image acquisition and analysis. In this study, we use deep recurrent convolutional neural networks to delineate skin strata in stacks of RCM images collected at consecutive depths. To perform diagnostic analysis, clinicians collect RCM images at 4-5 specific layers in the tissue. Our model automates this process by discriminating between RCM images of different layers. Testing our model on an expert labeled dataset of 504 RCM stacks, we achieve 87.97% classification accuracy, and 9-fold reduction in the number of anatomically impossible errors compared to the previous state-of-the-art.
Type
Publication
In The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops
publication
Alican Bozkurt
Authors
AI Scientist
I am an AI Scientist at Paige AI. I did my Ph.D. with Jennifer Dy, Dana Brooks, and Jan-Willem van de Meent at Northeastern University. My main research interests are machine learning with emphasis on probabilistic programming, deep neural networks, and their applications in biomedical image processing. I am one of the developers of Probabilistic Torch, a library for deep generative models that extends PyTorch. I am also one of the maintainers of the PyTorch distributions module.