Publications | Academic

Alican Bozkurt, Babak Esmaeili, Jean-Baptiste Tristan, Jennifer Dy, Dana H. Brooks, Jan-Willem van de Meent. Rate-Regularization and Generalization in VAEs. In AISTATS, 2021.

Alican Bozkurt. Deep Representation Learning for Complex Medical Images. Ph.D. Thesis, 2020.

Kivanc Kose, Alican Bozkurt, Christi Alessi-Fox, Melissa Gill, Caterina Longo, Giovanni Pellacani, Jennifer Dy, Dana H. Brooks, Milind Rajadhyaksha. Segmentation of Cellular Patterns in Confocal Images of Melanocytic Lesions in vivo via a Multiscale Encoder-Decoder Network (MED-Net). In MedIA, 2020.

Kivanc Kose, Alican Bozkurt, Christi Alessi-Fox, Dana H. Brooks, Jennifer Dy, Milind Rajadhyaksha, Melissa Gill. Utilizing Machine Learning for Image Quality Assessment for Reflectance Confocal Microscopy. In JID, 2019.

Kivanc Kose, Alican Bozkurt, Jennifer Dy, Dana Brooks, Milind Rajadhyaksha. Facilitating the Adoption of Reflectance Confocal Microscopy (RCM) in Clinical Cancer Care Practice with Machine Learning. In FAC Symposium, 2019.

Babak Esmaeili, Hao Wu, Sarthak Jain, Alican Bozkurt, N. Siddarth, Brooks Paige, Jennifer Dy, Dana H. Brooks, Jan-Willem van de Meent. Structured Disentagled Representations. In AISTATS, 2019.

Alican Bozkurt, Babak Esmaeili, Jennifer Dy, Dana H. Brooks, Jan-Willem van de Meent. Can VAEs generate novel examples?. In CRACT, 2018.

Alican Bozkurt, Kivanc Kose, Christi Alessi-Fox, Melissa Gill, Dana H. Brooks, Jennifer G. Dy, Milind Rajadhyaksha. A Multiresolution Convolutional Neural Network with Partial Label Training for Annotating Reflectance Confocal Microscopy Images of Skin. In MICCAI, 2018.

Kivanc Kose, Alican Bozkurt, Christi Alessi-Fox, Melissa Gill, Dana H. Brooks, Jennifer Dy, Milind Rajadhyaksha. A Multiresolution Deep Learning Framework for Automated Annotation of Reflectance Confocal Microscopy Images. Microscopy Histopathology and Analytics, 2018.

Alican Bozkurt, Trevor Gale, Kivanc Kose, Christi Alessi-Fox, Dana H. Brooks, Milind Rajadhyaksha, Jennifer Dy. Delineation of Skin Strata in Reflectance Confocal Microscopy Images With Recurrent Convolutional Networks. In CVMI, 2017.

Alican Bozkurt, Kivanc Kose, Jaume Coll-Font, Christi Alessi-Fox, Dana H. Brooks, Jennifer Dy, Milind Rajadhyaksha. Delineation of Skin Strata in Reflectance Confocal Microscopy Images using Recurrent Convolutional Networks with Toeplitz Attention. In ML4H, 2017.

Kivanc Kose, Alican Bozkurt, Setareh Ariafar, Christi Alessi-Fox, Melissa Gill, Jennifer Dy, Dana H. Brooks, Milind Rajadhyaksha. Deep learning based classification of morphological patterns in reflectance confocal microscopy to guide noninvasive diagnosis of melanocytic lesions. In SPIE Photonics West BioS 2017, 2017.

Alican Bozkurt, Kivanc Kose, Christi Alessi-Fox, Jennifer Dy, Dana H. Brooks, Milind Rajadhyaksha. Unsupervised delineation of stratum corneum using reflectance confocal microscopy and spectral clustering. In SRT, 2016.

J.P. Campbell, E. Ataer-Cansizoglu, V. Bolon-Canedo, Alican Bozkurt, D. Erdogmus, J. Kalpathy-Cramer, S.N. Patel, J.D. Reynolds, and others. Expert diagnosis of plus disease in retinopathy of prematurity from computer-based image analysis. In JAMA Opthalmology, 2016.

E. Ataer-Cansizoglu, V. Bolon-Canedo, J.P. Campbell, Alican Bozkurt, D. Erdogmus, J. Kalpathy-Cramer, S.N. Patel, K. Jonas, R.V.P. Chan, S. Ostmo, M.F. Chiang, on behalf of the i-ROP Research Consortium. Computer-Based Image Analysis for Plus Disease Diagnosis in Retinopathy of Prematurity: Performance of the “i-ROP” System and Image Features Associated With Expert Diagnosis. In TVST, 2015.

Alican Bozkurt, Pinar Duygulu, A. Enis Cetin. Classifying fonts and calligraphy styles using complex wavelet transform. In SIVP, 2015.

Alican Bozkurt, Alexander Suhre, A. Enis Cetin. Multi-scale directional-filtering-based method for follicular lymphoma grading. In SIVP, 2014.

Mohamed Tofighi, Alican Bozkurt, Kivanc Kose, A. Enis Cetin. Deconvolution using projections onto the epigraph set of a convex cost function. In SIU, 2014.

A. Enis Cetin, Alican Bozkurt, Osman Gunay, Y. Hakan Habiboglu, Kivanc Kose, Ibrahim Onaran, Mohammad Tofighi, Rasim Akin Sevimli. Projections onto convex sets (POCS) based optimization by lifting. In GlobalSIP, 2014.